cut = '/usr/bin/cut' # Linux cut command
paste = '/usr/bin/paste' # Linux paste command
FEPfileList = [] # List of FEP files
mfptfileList = [] # List of mfpt files
DynaSingleList = [] # temp file for a bit bit
WorOut = '../../rmsd_0.300000.out' # do not contain 0, 1-based
DynaOut = 'dyna.out' # output file
PeakH = 1.0 # height of barrier in the unit same as in the FEP file
NCpu = 8 # number of cores in parallel

#####################
#with open('../../PlotTargets/targets.txt') as f:
#    targets = f.readlines()
#for target1 in targets:
#    target1 = int(target1)
#    FEPfileList.append('../../PlotTargets/targets/FEP_%d.txt'%target1)
#    mfptfileList.append('../../PlotTargets/targets/mfpt_%d.txt'%target1)
#    DynaSingleList.append('../../PlotTargets/targets/Dyna_%d.txt'%target1)
